Test all from pixi task

+ only problem: FANS is run from global scope - if pixi global fans is there, that one is run....

Author: claudiushaag

.github/workflows/pixi_build_mac.yaml

@@ -0,0 +1,38 @@
+import pytest
+import os
+
+def pytest_addoption(parser):
+    parser.addoption(
+        "--from-pixi", action="store_true", default=False,
+        help="Run tests from pixi task."
+    )
+
+@pytest.fixture(
+    params=[
+        "test_J2Plasticity",
+        "test_LinearElastic",
+        "test_LinearThermal",
+        "test_PseudoPlastic",
+    ]
+)
+def test_files(request):
+    json_base_dir = os.path.join(
+        os.path.dirname(os.path.abspath(__file__)), "../input_files/"
+    )
+    # Determine the HDF5 base directory based on the --from-pixi option
+    # if run from pixi, use output directory; otherwise, use build/test directory, as it is the one used by ctest
+    if request.config.getoption("--from-pixi"):
+        h5_base_dir = os.path.join(
+            os.path.dirname(os.path.abspath(__file__)), "../output"
+        )
+    else:
+        h5_base_dir = os.path.join(
+            os.path.dirname(os.path.abspath(__file__)), "../../build/test/"
+        )
+
+    json_path = os.path.join(json_base_dir, f"{request.param}.json")
+    h5_path = os.path.join(h5_base_dir, f"{request.param}.h5")
+
+    if os.path.exists(json_path) and os.path.exists(h5_path):
+        return json_path, h5_path
+    pytest.skip(f"Required test files not found: {json_path} or {h5_path}")

test/pytest/conftest.py

@@ -4,31 +4,6 @@
 import pytest
 from fans_dashboard.core.utils import identify_hierarchy, extract_and_organize_data
 
-
-@pytest.fixture(
-    params=[
-        "test_J2Plasticity",
-        "test_LinearElastic",
-        "test_LinearThermal",
-        "test_PseudoPlastic",
-    ]
-)
-def test_files(request):
-    json_base_dir = os.path.join(
-        os.path.dirname(os.path.abspath(__file__)), "../input_files/"
-    )
-    h5_base_dir = os.path.join(
-        os.path.dirname(os.path.abspath(__file__)), "../../build/test/"
-    )
-
-    json_path = os.path.join(json_base_dir, f"{request.param}.json")
-    h5_path = os.path.join(h5_base_dir, f"{request.param}.h5")
-
-    if os.path.exists(json_path) and os.path.exists(h5_path):
-        return json_path, h5_path
-    pytest.skip(f"Required test files not found: {json_path} or {h5_path}")
-
-
 def test_displacement_averaging(test_files):
     """
     This test verifies that the average of displacement fluctuations is zero for all

test/pytest/test_displacement_averaging.py

@@ -4,31 +4,6 @@
 import pytest
 from fans_dashboard.core.utils import identify_hierarchy, extract_and_organize_data
 
-
-@pytest.fixture(
-    params=[
-        "test_J2Plasticity",
-        "test_LinearElastic",
-        "test_LinearThermal",
-        "test_PseudoPlastic",
-    ]
-)
-def test_files(request):
-    json_base_dir = os.path.join(
-        os.path.dirname(os.path.abspath(__file__)), "../input_files/"
-    )
-    h5_base_dir = os.path.join(
-        os.path.dirname(os.path.abspath(__file__)), "../../build/test/"
-    )
-
-    json_path = os.path.join(json_base_dir, f"{request.param}.json")
-    h5_path = os.path.join(h5_base_dir, f"{request.param}.h5")
-
-    if os.path.exists(json_path) and os.path.exists(h5_path):
-        return json_path, h5_path
-    pytest.skip(f"Required test files not found: {json_path} or {h5_path}")
-
-
 def test_homogenization_consistency(test_files):
     """
     This test verifies that the relationship stress_average = homogenized_tangent * strain_average

test/pytest/test_homogenization_consistency.py

@@ -5,31 +5,6 @@
 from fans_dashboard.core.utils import identify_hierarchy, extract_and_organize_data
 from scipy.linalg import eigvalsh
 
-
-@pytest.fixture(
-    params=[
-        "test_J2Plasticity",
-        "test_LinearElastic",
-        "test_LinearThermal",
-        "test_PseudoPlastic",
-    ]
-)
-def test_files(request):
-    json_base_dir = os.path.join(
-        os.path.dirname(os.path.abspath(__file__)), "../input_files/"
-    )
-    h5_base_dir = os.path.join(
-        os.path.dirname(os.path.abspath(__file__)), "../../build/test/"
-    )
-
-    json_path = os.path.join(json_base_dir, f"{request.param}.json")
-    h5_path = os.path.join(h5_base_dir, f"{request.param}.h5")
-
-    if os.path.exists(json_path) and os.path.exists(h5_path):
-        return json_path, h5_path
-    pytest.skip(f"Required test files not found: {json_path} or {h5_path}")
-
-
 def test_homogenized_tangent_spd(test_files):
     """
     This test verifies that the homogenized tangent is strictly Symmetric Positive Definite (SPD)

test/pytest/test_homogenized_tangent_spd.py

@@ -10,31 +10,6 @@
     compute_volume_fractions,
 )
 
-
-@pytest.fixture(
-    params=[
-        "test_J2Plasticity",
-        "test_LinearElastic",
-        "test_LinearThermal",
-        "test_PseudoPlastic",
-    ]
-)
-def test_files(request):
-    json_base_dir = os.path.join(
-        os.path.dirname(os.path.abspath(__file__)), "../input_files/"
-    )
-    h5_base_dir = os.path.join(
-        os.path.dirname(os.path.abspath(__file__)), "../../build/test/"
-    )
-
-    json_path = os.path.join(json_base_dir, f"{request.param}.json")
-    h5_path = os.path.join(h5_base_dir, f"{request.param}.h5")
-
-    if os.path.exists(json_path) and os.path.exists(h5_path):
-        return json_path, h5_path
-    pytest.skip(f"Required test files not found: {json_path} or {h5_path}")
-
-
 def test_homogenized_tangent_within_VRbounds(test_files):
     """
     This test verifies that the homogenized tangent is within Voigt and Reuss bounds

test/pytest/test_homogenized_tangent_within_VRbounds.py

@@ -4,31 +4,6 @@
 import pytest
 from fans_dashboard.core.utils import identify_hierarchy, extract_and_organize_data
 
-
-@pytest.fixture(
-    params=[
-        "test_J2Plasticity",
-        "test_LinearElastic",
-        "test_LinearThermal",
-        "test_PseudoPlastic",
-    ]
-)
-def test_files(request):
-    json_base_dir = os.path.join(
-        os.path.dirname(os.path.abspath(__file__)), "../input_files/"
-    )
-    h5_base_dir = os.path.join(
-        os.path.dirname(os.path.abspath(__file__)), "../../build/test/"
-    )
-
-    json_path = os.path.join(json_base_dir, f"{request.param}.json")
-    h5_path = os.path.join(h5_base_dir, f"{request.param}.h5")
-
-    if os.path.exists(json_path) and os.path.exists(h5_path):
-        return json_path, h5_path
-    pytest.skip(f"Required test files not found: {json_path} or {h5_path}")
-
-
 def test_loading_to_strain_average(test_files):
     """
     This test verifies that the strain_average field in the results matches the macroscale_loading

test/pytest/test_loading_to_strain_average.py

@@ -4,31 +4,6 @@
 import pytest
 from fans_dashboard.core.utils import identify_hierarchy, extract_and_organize_data
 
-
-@pytest.fixture(
-    params=[
-        "test_J2Plasticity",
-        "test_LinearElastic",
-        "test_LinearThermal",
-        "test_PseudoPlastic",
-    ]
-)
-def test_files(request):
-    json_base_dir = os.path.join(
-        os.path.dirname(os.path.abspath(__file__)), "../input_files/"
-    )
-    h5_base_dir = os.path.join(
-        os.path.dirname(os.path.abspath(__file__)), "../../build/test/"
-    )
-
-    json_path = os.path.join(json_base_dir, f"{request.param}.json")
-    h5_path = os.path.join(h5_base_dir, f"{request.param}.h5")
-
-    if os.path.exists(json_path) and os.path.exists(h5_path):
-        return json_path, h5_path
-    pytest.skip(f"Required test files not found: {json_path} or {h5_path}")
-
-
 def test_strain_stress_averaging(test_files):
     """
     This test verifies that the average of strain/stress fields matches the strain_average/stress_average

test/pytest/test_strain_stress_averaging.py

@@ -18,6 +18,8 @@ fi
 TIME_CMD="command time -v"
 [[ "$OSTYPE" == "darwin"* ]] && TIME_CMD="command gtime -v"
 
+mkdir -p output
+
 # Run the jobs serially
 $TIME_CMD mpiexec -n $num_processes "$FANS_EXEC" input_files/test_LinearThermal.json output/test_LinearThermal.h5 > test_LinearThermal.log 2>&1