Merge branch 'develop' into patch-add-logo

Author: sanathkeshav

.github/workflows/build_and_test.yaml

@@ -33,7 +33,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Set up pixi
-        uses: prefix-dev/[email protected].8
+        uses: prefix-dev/[email protected].10
 
       - name: Generate build directory
         run: mkdir -p ${{ env.FANS_BUILD_DIR }}

.github/workflows/build_and_test_mac.yaml

@@ -33,7 +33,7 @@ jobs:
           brew install fftw eigen
 
       - name: Set up pixi
-        uses: prefix-dev/[email protected].8
+        uses: prefix-dev/[email protected].10
 
       - name: Generate build directory
         run: mkdir -p ${{ env.FANS_BUILD_DIR }}

CHANGELOG.md

@@ -1,5 +1,9 @@
 # FANS Changelog
 
+## latest
+
+- Add pixi task `h52xdmf` to generate XDMF from H5 files directly as `pixi run h52xdmf {h5filepath}`
+
 ## v0.4.1
 
 - remove std::sqrt from constexpr - failed on Clang https://github.com/DataAnalyticsEngineering/FANS/pull/64

pixi.toml

@@ -21,3 +21,4 @@ pyrecest = {git = "https://github.com/FlorianPfaff/pyRecEst.git"}
 [tasks]
 test = "pytest -v -s"
 precommit = "pre-commit run --all-files"
+h52xdmf = { args = ["file"], cmd = "cd \"$INIT_CWD\" && python -m fans_dashboard.plotting.h52xdmf -t -v {{file}}" }

test/README.md

@@ -51,3 +51,9 @@ Each test case has corresponding input JSON files in the `input_files/` director
 ```bash
 mpiexec -n 2 ./FANS input_files/test_LinearElastic.json test_results.h5
 ```
+
+To quickly visualize the test results, and accompanying XDMF for the HDF5 output can be generated which can be directly opened in ParaView for 3D visualization and analysis:
+
+```bash
+pixi run h52xdmf test_results.h5
+```