BAM adapter

[nataliechia]

Hi,
I am trying to align sequecing WGS. I am using Windows Jbrowse2, I don't find the appropriate adapter for uploading BAM files. Does this work on alternative version of the software, i.e. Linux? Limited coding/bioinformatics knowledge, so would be nice if you can guide me through.

Thanks!

Kind Regards,
Natalie

[cmdcolin]

The basic way to start with JBrowse desktop looks like this

You can open your reference genome from here https://jbrowse.org/jb2/docs/quickstart_desktop/ ("Open sequence file") or just use hg19 or hg38 from the quickstart if it is human

After that, you can open up a BAM file and it's BAI index by using File->Open track