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Update generation (#64)
* generate_schema adds unique property * update workflow and operation with new generation script * remove unused imports, change unique location * update operations.json with new format * fix version numbering
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‎schema/build/generate_schema.py‎

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@@ -31,6 +31,7 @@ def generate_component(op: str):
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op,
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],
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},
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"unique": (True if data.get("unique") else False),
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"parameters": data["parameters"],
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},
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"required": [

‎schema/operation.json‎

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@@ -1,6 +1,6 @@
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{
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"$schema": "https://json-schema.org/draft-07/schema",
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"$id": "https://standards.ncats.io/operation/1.1.0/schema",
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"$id": "https://standards.ncats.io/operation/1.2.0/schema",
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"anyOf": [
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{
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"$ref": "#/$defs/OperationAnnotate"
@@ -104,6 +104,7 @@
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"annotate"
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]
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},
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"unique": true,
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"parameters": {}
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},
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"required": [
@@ -121,6 +122,7 @@
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"annotate_edges"
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]
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},
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"unique": true,
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"parameters": {
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"type": "object",
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"properties": {
@@ -152,6 +154,7 @@
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"annotate_nodes"
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]
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},
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"unique": true,
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"parameters": {
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"type": "object",
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"properties": {
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"bind"
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]
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},
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"unique": false,
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"parameters": {}
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},
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"required": [
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"complete_results"
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]
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},
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"unique": false,
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"parameters": {}
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},
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"required": [
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"enrich_results"
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]
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},
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"unique": true,
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"parameters": {
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"type": "object",
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"properties": {
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"fill"
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]
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},
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"unique": true,
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"parameters": {
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"type": "object",
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"oneOf": [
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"filter_kgraph"
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]
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},
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"unique": false,
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"parameters": {}
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},
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"required": [
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"filter_kgraph_continuous_kedge_attribute"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {
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"filter_kgraph_discrete_kedge_attribute"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {
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"filter_kgraph_discrete_knode_attribute"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {
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"filter_kgraph_orphans"
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]
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},
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"unique": false,
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"parameters": {}
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},
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"required": [
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"filter_kgraph_percentile"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {
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"filter_kgraph_std_dev"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {
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"filter_kgraph_top_n"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {
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"filter_results"
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]
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},
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"unique": false,
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"parameters": {}
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},
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"required": [
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"filter_results_top_n"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {
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"lookup"
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]
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},
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"unique": true,
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"parameters": {}
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},
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"required": [
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"lookup_and_score"
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]
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},
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"unique": true,
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"parameters": {}
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},
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"required": [
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"overlay"
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]
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},
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"unique": false,
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"parameters": {}
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},
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"required": [
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"overlay_compute_jaccard"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {
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"overlay_compute_ngd"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {
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"overlay_connect_knodes"
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]
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},
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"unique": false,
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"parameters": {}
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},
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"required": [
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"overlay_fisher_exact_test"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {
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"restate"
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]
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},
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"unique": true,
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"parameters": {}
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},
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"required": [
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"score"
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]
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},
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"unique": true,
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"parameters": {}
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},
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"required": [
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"sort_results"
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]
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},
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"unique": false,
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"parameters": {}
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},
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"required": [
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"sort_results_edge_attribute"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {
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"sort_results_node_attribute"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {
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"sort_results_score"
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]
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},
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"unique": false,
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"parameters": {
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"type": "object",
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"properties": {

‎schema/workflow.json‎

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@@ -1,8 +1,8 @@
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{
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"$schema": "https://json-schema.org/draft-07/schema",
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"$id": "https://standards.ncats.io/workflow/1.1.0/schema",
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"$id": "https://standards.ncats.io/workflow/1.2.0/schema",
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"type": "array",
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"items": {
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"$ref": "https://standards.ncats.io/operation/1.1.0/schema"
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"$ref": "https://standards.ncats.io/operation/1.2.0/schema"
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}
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}

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