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docs/index.rst

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:ref:`hicPlotDistVsCounts` Plot the decay in interaction frequency with distance
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:ref:`hicPlotMatrix` Plots a Hi-C matrix as a heatmap
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:ref:`hicPlotTADs` Plots TADs as a track that can be combined with other tracks (genes, signal, interactions)
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:ref:`hicPlotViewpoint` A plot with the interactions around a reference point or region.
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:ref:`hicPlotViewpoint` A plot with the interactions around a reference point or region.
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:ref:`hicAggreagteContacts` A tool that allows plotting of aggregated Hi-C sub-matrices of a specified list of positions.
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:ref:`hicSumMatrices` Adds Hi-C matrices of the same size
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:ref:`hicPlotDistVsCounts` Plots distance vs. Hi-C counts of corrected data
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:ref:`hicExport` Export matrix to text formats

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