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docs/content/News.rst

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News and Developments
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=====================
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Release 2.1.1
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------------
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**27 March 2018**
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This release fixes a problem related to python3 in which chromosome names were of bytes type
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Release 2.1
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-----------
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**5 March 2018**
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The 2.1 version of HiCExplorer comes with new features and bugfixes.
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- Adding the new feature `hicAggregateContacts`: A tool that allows plotting of aggregated Hi-C sub-matrices of a specified list of positions.
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- Many improvements to the documentation and the help text. Thanks to @GinaRe and @gtrichard.
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- hicPlotMatrix:
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- supports only bigwig files for an additional data track.
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- the argument `--pca` was renamed to `--bigwig`
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- Smoothing the bigwig values to neighboring bins if no data is present there
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- Fixes to a bug concerning a crash of `tight_layout`
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- Adding the possibility to flip the sign of the values of the bigwig track
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- Adding the possibility to scale the values of the bigwig track
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- hicPlotViewpoint: Adds a feature to plot multiple matrices in one image
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- cooler file format:
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- supports mcool files
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- applies correction factors if present
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- optionally reads `bin['weight']`
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- fixes:
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- a crash in hicPlotTads if `horizontal lines` were used
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- checks if all characters of a title are ASCII. If not they are converted to the closest looking one.
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- Updated and fixate version number of the dependencies
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Release 2.0
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hicexplorer/_version.py

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# This file is originally generated from Git information by running 'setup.py
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# version'. Distribution tarballs contain a pre-generated copy of this file.
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__version__ = '2.0'
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__version__ = '2.1.1'

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