minimize to test only macOS

Author: lldelisle

azure-pipelines.yml

@@ -2,108 +2,21 @@ pr:
   autoCancel: true
 
 stages:
-- stage: lint
-  jobs:
-    - job: Linux
-      timeoutInMinutes: 0
-      pool:
-        vmImage: 'Ubuntu-latest'
-      container: python:3.8
-      steps:
-      - bash: |
-          echo "##vso[task.prependpath]$HOME/.local/bin"
-          hash -r
-        displayName: Add .local/bin to PATH
-      - bash:
-          python -m pip install --user --upgrade flake8
-        displayName: install flake8
-      - script:
-          flake8 . --exclude=.venv,.build,build --ignore=E501,F403,E402,F999,F405,E712,W503
-        displayName: linting
 - stage: test
-  dependsOn: [lint]
-  condition: succeeded()
   jobs:
-    - job: Linux
-      timeoutInMinutes: 0
-      pool:
-        vmImage: 'ubuntu-latest'
-      strategy:
-        matrix:
-          Python38LowMatplotlib:
-            python.version: '3.8'
-            matplotlib.version: '3.1.1'
-          Python38HighMatplotlib:
-            python.version: '3.8'
-            matplotlib.version: '3.6.0'
-          Python39HighMatplotlib:
-            python.version: '3.9'
-            matplotlib.version: '3.7.3'
-          Python310HighMatplotlib:
-            python.version: '3.10'
-            matplotlib.version: '3.8.4'
-
-      steps:
-      - bash: |
-          echo "##vso[task.prependpath]$CONDA/bin"
-          hash -r
-        displayName: Add conda to PATH
-      - bash: |
-          conda config --set always_yes yes --set changeps1 no
-          conda info -a
-          cat requirements_CI.txt | awk -v v=$(matplotlib.version) -v vp=$(python.version) 'BEGIN{print "python =="vp}{if($0~/matplotlib/){$0="matplotlib =="v}; print}' > requirements_CI_updated.txt
-          conda create -n pygenometracks --yes -c conda-forge -c bioconda --file requirements_CI_updated.txt
-          source activate pygenometracks
-          python -m pip install .
-        displayName: installing dependencies
-      - script: |
-          source activate pygenometracks
-          py.test pygenometracks --doctest-modules -n 4
-        displayName: pytest
-
     - job: OSX
       timeoutInMinutes: 0
       pool:
         vmImage: 'macOS-latest'
-      container: python:3.8
       steps:
       - bash: |
-          echo "##vso[task.prependpath]$CONDA/bin"
-          hash -r
-        displayName: Add conda to PATH
-      # On Hosted macOS, the agent user doesn't have ownership of Miniconda's installation directory/
-      # We need to take ownership if we want to update conda or install packages globally
-      - bash: |
-          echo "user is $USER"
-          echo "conda is $CONDA"
-          echo "PATH is $PATH"
-          sudo chown -R $USER $CONDA
-        displayName: Take ownership of conda installation
+          brew install micromamba
+        displayName: Install micromamba
       - bash: |
           conda config --set always_yes yes --set changeps1 no
           conda info -a
-          conda create -n pygenometracks --yes -c conda-forge -c bioconda --file requirements_CI.txt
+          cat requirements_CI.txt | awk -v vp=3.7 'BEGIN{print "python =="vp}{print}' > requirements_CI_updated.txt
+          conda create -n pygenometracks --yes -c conda-forge -c bioconda --file requirements_CI_updated.txt
           source activate pygenometracks
           python -m pip install .
         displayName: installing dependencies
-
-- ${{ if eq(variables['Build.SourceBranch'], 'refs/heads/master') }}:
-  - stage: Deploy
-    dependsOn: [test]
-    condition: succeeded()
-    jobs:
-    - job: pypi
-      pool:
-        vmImage: 'Ubuntu-latest'
-      container: python:3.8
-      steps:
-      - script: |
-          python -m pip install --upgrade pip
-          pip install build
-          python -m build
-          python -m pip install --user --upgrade twine
-          python -m twine upload -r pypi dist/*
-        env:
-          TWINE_USERNAME: lldelisle
-          TWINE_PASSWORD: $(TWINE_LUCILLE_PASSWORD)
-        displayName: 'Push to Python Package Index'