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README.md

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- The scripts are numbered according to their order of execution.
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- Influenza was used as an example. However, all other viruses were processed, evaluated, and analyzed in the same way.
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- For the CoreModels and CoreReactions, only a small subset of files were uploaded due to storage space reasons. The remaining files can be generated accordingly using the provided code.
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- The matlab models are uploaded as compressed files.
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#### To convert hierarchical models defined with the Hierarchical Model Composition package into their "flattened" versions use the script within the `flatteningScript` directory.
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