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The Systems Biology Simulation Core Library
The Systems Biology Simulation Core Library provides an efficient and exhaustive Java™ implementation of methods to interpret the content of models encoded in the Systems Biology Markup Language (SBML) and its numerical solution. This library is based on the JSBML project and can be used on every operating system, for which a Java Virtual Machine is available.
Please note that this project does not contain any user interface, neither a command-line interface, nor a graphical user interface. This project has been developed as a pure programming library. To support the Minimum Information About a Simulation Experiment (MIASE) effort, it understands Simulation Experiment Description Markup Language (SED-ML) files.
Its abstract type and interface hierarchy facilitates the implementation of further community standards, such as CellML.
| When using the Simulation Core Library, please cite: Roland Keller, Alexander Dörr, Akito Tabira, Akira Funahashi, Michael J. Ziller, Richard Adams, Nicolas Rodriguez, Nicolas Le Novère, Noriko Hiroi, Hannes Planatscher, Andreas Zell, and Andreas Dräger. The systems biology simulation core algorithm. *BMC Systems Biology*, 7:55, July 2013. [ DOI | link | pdf ] |
Systems Biology Simulation Core Library