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The primary author of the mentioned paper wrote back to me and gave his OK. So, I will create an issue from this Discussion. |
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The paper ‘Standardising biomass reactions and ensuring complete mass balance in genome-scale metabolic models’ from 2017[1] provides scripts to standardise biomass reactions. These scripts could be integrated into the module
biomass.py
, currently only available on the development branch.I already wrote to one of the corresponding authors of the paper[1]. As I did not hear back from the corresponding author, I will ask the head of the group if we can integrate their scripts.
[1]
Siu H J Chan and others, Standardising biomass reactions and ensuring complete mass balance in genome-scale metabolic models, Bioinformatics, Volume 33, Issue 22, November 2017, Pages 3603–3609, https://doi.org/10.1093/bioinformatics/btx453
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All reactions