Inquiry about Parameters for snRNA-seq Analysis

[Yaxiong293]

I am interested in using your code for single nuclei RNA sequencing (snRNA-seq) analysis. Could you please confirm if your code is suitable for this type of analysis? Could you please provide information on the specific parameters that need to be added or modified for snRNA-seq analysis?

[nictru]

Hey, I am not a pro on snRNA-seq data processing, but I help maintaining this pipeline. To assess this issue, you can check the best practices of the aligner you are planning to use.

If there are no further parameters for the aligner required, then also the pipeline should work fine as it is. If you find some adjustments to be needed, you can send back the corresponding documentation and we can elaborate how the pipeline can be configured to fit your needs.

[nictru]

Closing due to inactivity, if there are more specific questions, feel free to reopen