Skip to content

Commit f6e1598

Browse files
effigieseffigies
committed
STY: Second attempt at fixing PDF table
1 parent bb5db9a commit f6e1598

File tree

1 file changed

+7
-7
lines changed

1 file changed

+7
-7
lines changed

‎src/04-modality-specific-files/08-genetic-descriptor.md‎

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -82,13 +82,13 @@ Datasets containing the `Genetics` field in `dataset_description.json` or the
8282
fields:
8383

8484
| Field name | Definition | Values |
85-
|------------------------------|-----------------------------------------------------------------------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
86-
| GeneticLevel | REQUIRED. Describes the level of analysis | `Genetic`, `Genomic`, `Epigenomic`, `Transcriptomic`, `Metabolomic`, or `Proteomic` |
87-
| AnalyticalApproach | OPTIONAL. Methodology or methodologies used to analyse the GeneticLevel | String or list of strings. Each Value must be taken from the [database of Genotypes and Phenotypes (dbGaP)][gapsolr] under /Study/Molecular Data Type, for instance `SNP Genotypes (Array)` or `Methylation (CpG)` |
88-
| SampleOrigin | REQUIRED. Describes from which tissue the genetic information was extracted | `blood`, `saliva`, `brain`, `csf`, `breast milk`, `bile`, `amniotic fluid`, `other biospecimen` |
89-
| TissueOrigin | OPTIONAL. Describes the type of tissue analyzed for SampleOrigin `brain` | `gray matter`, `white matter`, `csf`, `meninges`, `macrovascular` or `microvascular` |
90-
| BrainLocation | OPTIONAL. Refers to the location in space of the TissueOrigin | `MNI coordinate` or a `label` taken from the [Allen Brain Atlas][allen] possibly `layer` to refer to layer-specific gene expression, which can also tie up with laminar fMRI |
91-
| CellType | OPTIONAL. Describes the type of cell analyzed | Value should come from the [cell ontology][ontology] |
85+
|----------------------------------------------------------|-----------------------------------------------------------------------------|--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
86+
| GeneticLevel | REQUIRED. Describes the level of analysis | `Genetic`, `Genomic`, `Epigenomic`, `Transcriptomic`, `Metabolomic`, or `Proteomic` |
87+
| AnalyticalApproach | OPTIONAL. Methodology or methodologies used to analyse the GeneticLevel | String or list of strings. Each Value must be taken from the [database of Genotypes and Phenotypes (dbGaP)][gapsolr] under /Study/Molecular Data Type, for instance `SNP Genotypes (Array)` or `Methylation (CpG)` |
88+
| SampleOrigin | REQUIRED. Describes from which tissue the genetic information was extracted | `blood`, `saliva`, `brain`, `csf`, `breast milk`, `bile`, `amniotic fluid`, `other biospecimen` |
89+
| TissueOrigin | OPTIONAL. Describes the type of tissue analyzed for SampleOrigin `brain` | `gray matter`, `white matter`, `csf`, `meninges`, `macrovascular` or `microvascular` |
90+
| BrainLocation | OPTIONAL. Refers to the location in space of the TissueOrigin | `MNI coordinate` or a `label` taken from the [Allen Brain Atlas][allen] possibly `layer` to refer to layer-specific gene expression, which can also tie up with laminar fMRI |
91+
| CellType | OPTIONAL. Describes the type of cell analyzed | Value should come from the [cell ontology][ontology] |
9292

9393
To ensure dataset description consistency, we recommend following [Multi-omics approaches to disease](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1215-1) by Hasin et al. 2017 to determine the `GeneticLevel:`
9494
- `Genetic`: data report on a single genetic location (typically directly in the `participants.tsv` file)

0 commit comments

Comments
 (0)