Packages(xlsx,dplyr) Execution inside the HPC cluster #313
Closed
nithinev17
started this conversation in
General
Replies: 0 comments
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Uh oh!
There was an error while loading. Please reload this page.
-
Is there any way to prepare an excelsheet rows with xlsx package in HPC cluster
I want to add excel sheet rows inside the function call
HPC code -
HPCCall <- function(x,y){
summ <- data.frame("compound" = mydata$
Compound
[i])allSumm <- addDataFrame(summ, sheet = ws_summary, col.names = TRUE)
}
Cluster MQ Q Function
wb = createWorkbook()
ws_summary <- createSheet(wb, sheetName = "Summary")
clustermq::Q(HPCCall, x=1:nrow(mydata), const=list(y=mydata), export = list(wb=wb,ws_summary=ws_summary),pkgs= c("xlsx"), n_jobs = 2, log_worker=TRUE)
Error
jobs failed (0 warnings). Stopping.
(Error #1) java.lang.NullPointerException
Beta Was this translation helpful? Give feedback.
All reactions