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DRAFT - Updated the transfer metadata notebook #91

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DRAFT - Updated the transfer metadata notebook #91

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62c8c4b
Updated the transfer metadata notebook to use same type of input as r…
aschroed Sep 26, 2022
f6433fe
trying to find conflicting items with non-matching uuids
aschroed Sep 29, 2022
db8ded8
some updates to secondary search for existing
aschroed Sep 29, 2022
90b018f
add items to order
aschroed Sep 30, 2022
2b140a1
missing comma fix
aschroed Sep 30, 2022
844179d
updates to find and transfer notebook to deal with conflicts
aschroed Sep 30, 2022
fc580a8
More updates to functionality to avoid clashing items
aschroed Oct 3, 2022
56096b0
Merge branch 'upd_transfer_items_nb' of https://github.com/4dn-dcic/d…
aschroed Oct 3, 2022
13b248a
more updates
aschroed Oct 4, 2022
22143d9
add more flexibility and confirm copying attachment works
aschroed Oct 4, 2022
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4 changes: 4 additions & 0 deletions functions/notebook_functions.py
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Original file line number Diff line number Diff line change
Expand Up @@ -496,6 +496,8 @@ def change_additional_fields(patch_body, item, item_type, item_level, change_lev
'badge',
'organism',
'genomic_region',
'gene',
'bio_feature',
'target',
'imaging_path',
'publication',
Expand All @@ -507,6 +509,7 @@ def change_additional_fields(patch_body, item, item_type, item_level, change_lev
'modification',
'protocol',
'sop_map',
'experiment_type',
'biosample_cell_culture',
'individual_human',
'individual_mouse',
Expand All @@ -524,6 +527,7 @@ def change_additional_fields(patch_body, item, item_type, item_level, change_lev
'quality_metric_dedupqc_repliseq',
'quality_metric_chipseq',
'quality_metric_atacseq',
'quality_metric_workflowrun',
'microscope_setting_d1',
'microscope_setting_d2',
'microscope_setting_a1',
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