Update CI and pixi with test feature

.github/workflows/build_and_test.yaml

@@ -34,6 +34,8 @@ jobs:
 
       - name: Set up pixi
         uses: prefix-dev/[email protected]
+        with:
+          environments: dashboard
 
       - name: Generate build directory
         run: mkdir -p ${{ env.FANS_BUILD_DIR }}
@@ -88,7 +90,7 @@ jobs:
           pixi install
 
       - name: Run pytest checks on HDF5 output
-        run: pixi run test
+        run: pixi run pytest
 
       - uses: actions/upload-artifact@v4
         if: failure()

.github/workflows/build_and_test_mac.yaml

@@ -35,6 +35,8 @@ jobs:
 
       - name: Set up pixi
         uses: prefix-dev/[email protected]
+        with:
+          environments: dashboard
 
       - name: Generate build directory
         run: mkdir -p ${{ env.FANS_BUILD_DIR }}
@@ -92,7 +94,7 @@ jobs:
           pixi install
 
       - name: Run pytest checks on HDF5 output
-        run: pixi run test
+        run: pixi run pytest
 
       - uses: actions/upload-artifact@v4
         if: failure()

.github/workflows/pixi_build.yaml

@@ -0,0 +1,41 @@
+name: Build and test pixi-build
+# Builds FANS for macOS and Ubuntu and runs the tests.
+on:
+  push:
+    branches:
+      - main
+      - develop
+  pull_request:
+  workflow_dispatch:
+concurrency:
+  group: ${{ github.event_name }}-${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: ${{github.event_name == 'pull_request'}}
+jobs:
+  build:
+    name: ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    env:
+      FANS_BUILD_DIR: build
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [macos-latest, ubuntu-latest]
+    steps:
+      - name: Checkout code
+        uses: actions/checkout@v5
+
+      - name: Set up pixi
+        uses: prefix-dev/[email protected]
+        with:
+          environments: default
+
+      - name: Run pytest checks on HDF5 output
+        run: pixi run test
+
+      - uses: actions/upload-artifact@v4
+        if: failure()
+        with:
+          name: ${{ matrix.os }} PyTest logs
+          path: |
+            **/pytest*.xml
+            **/.pytest_cache

README.md

@@ -58,7 +58,7 @@ Also, we recommend setting up a Python virtual environment for the [`FANS_Dashbo
 curl -fsSL https://pixi.sh/install.sh | sh
 
 # Create and activate the environment
-pixi shell
+pixi shell -e dashboard
 ```
 
 We also provide a set of Docker images. For further information, please refer to the [Docker README](docker/README.md).

pixi.toml

@@ -1,9 +1,9 @@
 [workspace]
 channels = ["conda-forge"]
 name = "FANS"
-platforms = ["linux-64", "win-64", "osx-64", "osx-arm64"]
+platforms = ["linux-64", "osx-64", "osx-arm64"]
 
-[dependencies]
+[feature.dashboard.dependencies]
 python = ">=3.13.5,<3.14"
 pytest = ">=8.4.1,<9"
 pre-commit = ">=4.2.0,<5"
@@ -12,14 +12,21 @@ quaternion = ">=2024.0.8,<2025"
 beartype = ">=0.21.0,<0.22"
 ipykernel = ">=6.29.5,<7"
 
-
-[pypi-dependencies]
+[feature.dashboard.pypi-dependencies]
 fans-dashboard = { path = "FANS_Dashboard", editable = true }
 msutils = {git = "https://github.com/DataAnalyticsEngineering/MSUtils.git"}
 pyrecest = {git = "https://github.com/FlorianPfaff/pyRecEst.git"}
 
-
-[tasks]
-test = "pytest -v -s"
+[feature.dashboard.tasks]
+pytest = "pytest -v -s"
 precommit = "pre-commit run --all-files"
 h52xdmf = { args = ["file"], cmd = "cd \"$INIT_CWD\" && python -m fans_dashboard.plotting.h52xdmf -t -v {{file}}" }
+
+[tasks]
+test = {depends-on = [
+  { task = "pytest", environment = "dashboard" }, # Will be changed later with pixi-build
+]}
+
+[environments]
+default = {features = ["dashboard"]}
+dashboard = { features = ["dashboard"], no-default-feature = true }

test/README.md

@@ -31,7 +31,7 @@ This will run all test cases and generate result files in `build/test/`.
 After running the tests, the results are verified using pytest. We recommend running pytest via a pre-configured Pixi task,
 
 ```bash
-pixi run test
+pixi run pytest
 ```
 
 Note: The validation tests expect result files to be in `build/test/` directory, so make sure to run the tests first.