add compressed fasta support #53
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Thanks @KateSakharova. But wouldn't be easier to handle .gz here https://github.com/EBI-Metagenomics/mobilome-annotation-pipeline/blob/main/bin/assembly_filter_rename.py? |
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@mberacochea I don't know that pipeline very well.. that is why easy fix was to add before RENAME |
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Alright, don't merge this one. I need to do some housekeeping here so I'll adjust the rename step |
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@mberacochea I will add to rename |
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Should work for s3 files as well