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Hackin' around
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Hackin' around

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@seqan

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feldroop/README.md

Hey, I'm Felix. Welcome to my profile! 🏠🌳

About me

I recently obtained my master's degree in bioinformatics from Freie Universität Berlin and am now looking for a position as a software engineer. My academic studies primarily focused on algorithms and data structures. During my master's program, I also developed a passion for software engineering. You can reach out to me via LinkedIn or email.

Skills

  • Design and implement algorithms and data structures for challenging technical problems 💡
  • Low-level, performance sensitive programming in C, C++ and Rust 🦀
  • Data science, statistical analysis, machine learning, deep learning using R, Python, TensorFlow 🐍
  • Desktop GUI development using Java and JavaFX ☕
  • Parallel/high-performance programming 🛰️
  • Domain knowledge in bioinformatics and sequence analysis 🧬

Notable projects

  • genedex - A fast, memory-efficent and easy-to-use implementation of the FM-Index in Rust.
  • libsais-rs - Idiomatic and mostly API bindings to allow using the C library libsais conveniently in Rust.
  • floxer - For my master's thesis, I developed a CLI tool in C++ that solves a common algorithmic problem in bioinformatics similar to sequence search. The tool is based on the FM-Index data structure and employs a task-based parallelism scheme. code thesis pdf
  • chopper - For my bachelor's thesis, I contributed to a tool that performs the preprocessing for a data structure based on Bloom Filters. I improved the algorithm by integrating set cardinality estimates from HyperLogLog sketches. code thesis pdf

What I'm currently doing

  • Sending out job applications 🧾
  • Taking online courses to improve my knowledge of web backend programming, networks, data bases and gain an understanding of embedded development 📈
  • Working on genedex, sais-drum and libsais-rs, my little Rust projects 🤖
  • Grinding Leetcode 🤓
  • Creating my own personal website 🌐

Pinned Loading

  1. genedex genedex Public

    A small and fast FM-Index for Rust

    Rust 13

  2. libsais-rs libsais-rs Public

    Rust bindings to libsais

    Rust 3

  3. floxer floxer Public

    FM-index longread PEX-based aligner

    C++ 4

  4. sais-drum sais-drum Public

    The SAIS suffix array construction algorithm in Rust

    Rust 1

  5. rust-fmindex-benchmark rust-fmindex-benchmark Public

    Rust 1

  6. crates-io-saca-benchmark crates-io-saca-benchmark Public

    Rust 2