Skip to content

Error message when tried to link to the page for OMP:0006026 #35

@dsiegele

Description

@dsiegele

Did a search for "nitrogen utilization phenotype"
Clicked on one of the terms returned by the search: Category:OMP:0006026 ! nitrogen source utilization phenotype
Error message: A database query error has occurred. This may indicate a bug in the software.

[60e1dc6999b065659bbb8deb] /wiki/index.php?title=Category:OMP:0006026_!_nitrogen_source_utilization_phenotype Wikimedia\Rdbms\DBQueryError from line 1457 of /var/www/html/omp/wiki/includes/libs/rdbms/database/Database.php: A database query error has occurred. Did you forget to run your application's database schema updater after upgrading?
Query: SELECT * FROM obo_archive.term,obo_archive.term_revision WHERE (term.ontology_id = '1') AND (term.term_id = term_revision.term_id) AND (term.last_data_version = '978') ORDER BY term_rev_id DESC
Function: OntologyArchive2::getAllTermsByVersion
Error: 3 Error writing file '/tmp/MYrdckNI' (Errcode: 28 - No space left on device) (127.0.0.1:3308)

Backtrace:
#0 /var/www/html/omp/wiki/includes/libs/rdbms/database/Database.php(1427): Wikimedia\Rdbms\Database->makeQueryException(string, integer, string, string)
#1 /var/www/html/omp/wiki/includes/libs/rdbms/database/Database.php(1200): Wikimedia\Rdbms\Database->reportQueryError(string, integer, string, string, boolean)
#2 /var/www/html/omp/wiki/includes/libs/rdbms/database/Database.php(1653): Wikimedia\Rdbms\Database->query(string, string)
#3 /usr/local/github/wiki-code/library/OntologyProject/OntologyDBI/OntologyArchive2.php(304): Wikimedia\Rdbms\Database->select(array, string, array, string, array)
#4 /usr/local/github/wiki-extensions/wiki-extensions-omp/OBOfig/OBOfig.php(111): OntologyArchive2->getAllTermsByVersion()
#5 /usr/local/github/wiki-extensions/wiki-extensions-omp/OBOfig/OBOfig.php(63): OBOfigure->__construct(NULL, array, Parser, PPTemplateFrame_DOM)
#6 /var/www/html/omp/wiki/includes/parser/Parser.php(3888): efOBOfigRender(NULL, array, Parser, PPTemplateFrame_DOM)
#7 /var/www/html/omp/wiki/includes/parser/Preprocessor_DOM.php(1362): Parser->extensionSubstitution(array, PPTemplateFrame_DOM)
#8 /var/www/html/omp/wiki/includes/parser/Parser.php(3305): PPFrame_DOM->expand(DOMElement)
#9 /var/www/html/omp/wiki/includes/parser/Preprocessor_DOM.php(1277): Parser->braceSubstitution(array, PPFrame_DOM)
#10 /var/www/html/omp/wiki/includes/parser/Parser.php(2942): PPFrame_DOM->expand(DOMElement, integer)
#11 /var/www/html/omp/wiki/includes/parser/Parser.php(1293): Parser->replaceVariables(string)
#12 /var/www/html/omp/wiki/includes/parser/Parser.php(443): Parser->internalParse(string)
#13 /var/www/html/omp/wiki/includes/content/WikitextContent.php(323): Parser->parse(string, Title, ParserOptions, boolean, boolean, integer)
#14 /var/www/html/omp/wiki/includes/content/AbstractContent.php(516): WikitextContent->fillParserOutput(Title, integer, ParserOptions, boolean, ParserOutput)
#15 /var/www/html/omp/wiki/includes/poolcounter/PoolWorkArticleView.php(144): AbstractContent->getParserOutput(Title, integer, ParserOptions)
#16 /var/www/html/omp/wiki/includes/poolcounter/PoolCounterWork.php(123): PoolWorkArticleView->doWork()
#17 /var/www/html/omp/wiki/includes/page/Article.php(604): PoolCounterWork->execute()
#18 /var/www/html/omp/wiki/includes/page/CategoryPage.php(69): Article->view()
#19 /usr/local/github/wiki-extensions/wiki-extensions-hulab/ExtendedCategoryPage/ExtendedCategoryPage.php(133): CategoryPage->view()
#20 /var/www/html/omp/wiki/includes/Hooks.php(177): ExtendedCategoryPageHooks::wfExtendedCategoryPage(CategoryPage)
#21 /var/www/html/omp/wiki/includes/Hooks.php(205): Hooks::callHook(string, array, array, NULL)
#22 /var/www/html/omp/wiki/includes/page/CategoryPage.php(60): Hooks::run(string, array)
#23 /var/www/html/omp/wiki/includes/actions/ViewAction.php(68): CategoryPage->view()
#24 /var/www/html/omp/wiki/includes/MediaWiki.php(500): ViewAction->show()
#25 /var/www/html/omp/wiki/includes/MediaWiki.php(294): MediaWiki->performAction(CategoryPage, Title)
#26 /var/www/html/omp/wiki/includes/MediaWiki.php(861): MediaWiki->performRequest()
#27 /var/www/html/omp/wiki/includes/MediaWiki.php(524): MediaWiki->main()
#28 /var/www/html/omp/wiki/index.php(42): MediaWiki->run()
#29 {main}

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions