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@rannick rannick released this 24 Apr 11:02
· 1699 commits to master since this release
2.3.0
c45b22c
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Learn about vigilant mode.

Added

  • Shell specification to bash
  • COSMIC password put into quotes
  • Trimmed reads QC in MultiQC
  • Add ARRIBA_VISUALISATION to processed affected by --skip_vis
  • Option fusionreport_filter to in/activate fusionreport displaying of fusions detected by 2 or more tools

Changed

  • Arriba visualisation now runs for FusionInspector (combined tools) results, not only Arriba results
  • Updated metro map with trimming options and placed Arriba visualisation after FusionInspector
  • Exit with error when using squid in combination with any ensembl version different from 102

Fixed

  • Channel issue with indexing of files with using --cram squid
  • Arriba references published in the correct folder
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