Add info about diffab #67
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PR Dev to master for release after SOP day
Updated rnadeseq notes
skrakau
reviewed
Oct 24, 2024
| :doc:`markdown/pipelines/guideseq` | ||
| Guideseq analysis | ||
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| :doc:`markdown/pipelines/maxquant` |
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Where is this part, I can't find the corresponding markdown part?
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I forgot to add that file to git...I just pushed it
skrakau
reviewed
Oct 24, 2024
docs/markdown/pipelines/rnaseq.md
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| After the release of rnadeseq 2.1, the docker containers were moved from Docker Hub to the GitHub Container Registry (ghcr) as Docker announced a change of free subscriptions. For all rnadeseq versions >2.1, this is reflected in the pipeline, so you don't need to do anything. | ||
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| For version 2.1 or later, should you have trouble executing the pipeline because the container was removed from Docker Hub (this could for example lead to an error like "docker: Error response from daemon: manifest for qbicpipelines/rnadeseq:2.1 not found: manifest unknown: manifest unknown."), please save the following code to a `container.config` (change 2.1 to the version you want to use): |
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you mean "2.1 or previous versions"?
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Sorry Sabrina, I don't understand you question. If you refer to the sentence (change 2.1 to the version you want to use), that means that in the small config code, the user should replace 2.1 with the desired version number
skrakau
reviewed
Oct 24, 2024
skrakau
reviewed
Oct 24, 2024
skrakau
reviewed
Oct 24, 2024
skrakau
reviewed
Oct 24, 2024
Co-authored-by: Sabrina Krakau <[email protected]>
Co-authored-by: Sabrina Krakau <[email protected]>
Co-authored-by: Sabrina Krakau <[email protected]>
Co-authored-by: Sabrina Krakau <[email protected]>
WackerO
commented
Nov 7, 2024
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This adds info about the differentialabundance pipeline for rnaseq and Px analyses (and updates the rnadeseq version that should be used in rnaseq analysis).
I also added a short explanation about the docker -> github container registry change