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1. alphadia alphadia Public

   modular & open DIA search

   Jupyter Notebook 75 5

2. alphapeptdeep alphapeptdeep Public

   Deep learning framework for proteomics

   Jupyter Notebook 132 23

3. CKG CKG Public

   Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge disco…

   Jupyter Notebook 520 105

4. alphapept alphapept Public

   A modular, python-based framework for mass spectrometry. Powered by nbdev.

   HTML 180 33

5. alphatims alphatims Public

   An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

   Python 90 29

6. alphamap alphamap Public

   An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

   Jupyter Notebook 86 21