[FIX] Show example defaced derivative in a pipeline subdirectory #2065
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…line The defaced derivative that is contained in the `derivatives` folder should have a directory name like `derivatives/<pipeline>`.
robertoostenveld
added
derivatives
consistency
effigies
reviewed
Mar 3, 2025
effigies
approved these changes
May 22, 2025
christinerogers
approved these changes
Jun 11, 2025
effigies
changed the title
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
The derivatives introduction demonstrates a defaced T1w file as
derivatives/sub-01/sub-01_desc-defaced_T1w.nii, which places it directly under the derivatives folder. According to this it should however be in a subfolder corresponding to the pipeline name, so a directory name likederivatives/<pipeline>/sub-01/sub-01_desc-defaced_T1w.nii.I named the pipeline "defaced" and inserted it in the example file path. I also renamed the
sourcedata/privatedirectory intosourcedata/defaced.Closes #2134.