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1 change: 0 additions & 1 deletion src/neptune_query/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -304,7 +304,6 @@ def fetch_experiments_table(
limit=limit,
type_suffix_in_column_names=type_suffix_in_column_names,
container_type=_search.ContainerType.EXPERIMENT,
flatten_aggregations=True,
)


Expand Down
39 changes: 1 addition & 38 deletions src/neptune_query/internal/composition/attribute_components.py
Original file line number Diff line number Diff line change
Expand Up @@ -26,11 +26,7 @@
identifiers,
)
from ..composition import concurrency
from ..composition.attributes import (
AttributeDefinitionAggregation,
fetch_attribute_definition_aggregations,
fetch_attribute_definitions,
)
from ..composition.attributes import fetch_attribute_definitions
from ..retrieval import attribute_values as att_vals
from ..retrieval import (
search,
Expand Down Expand Up @@ -66,39 +62,6 @@ def fetch_attribute_definitions_split(
)


def fetch_attribute_definition_aggregations_split(
client: AuthenticatedClient,
project_identifier: identifiers.ProjectIdentifier,
attribute_filter: filters._BaseAttributeFilter,
executor: Executor,
fetch_attribute_definitions_executor: Executor,
sys_ids: list[identifiers.SysId],
downstream: Callable[
[
list[identifiers.SysId],
util.Page[identifiers.AttributeDefinition],
util.Page[AttributeDefinitionAggregation],
],
concurrency.OUT,
],
) -> concurrency.OUT:
return concurrency.generate_concurrently(
items=split.split_sys_ids(sys_ids),
executor=executor,
downstream=lambda sys_ids_split: concurrency.generate_concurrently(
fetch_attribute_definition_aggregations(
client=client,
project_identifiers=[project_identifier],
run_identifiers=[identifiers.RunIdentifier(project_identifier, sys_id) for sys_id in sys_ids_split],
attribute_filter=attribute_filter,
executor=fetch_attribute_definitions_executor,
),
executor=executor,
downstream=lambda page_pair: downstream(sys_ids_split, page_pair[0], page_pair[1]),
),
)


def fetch_attribute_definitions_complete(
client: AuthenticatedClient,
project_identifier: identifiers.ProjectIdentifier,
Expand Down
63 changes: 4 additions & 59 deletions src/neptune_query/internal/composition/attributes.py
Original file line number Diff line number Diff line change
Expand Up @@ -14,12 +14,11 @@
# limitations under the License.

from concurrent.futures import Executor
from dataclasses import dataclass
from typing import (
Generator,
Iterable,
Literal,
Optional,
Tuple,
)

from neptune_api.client import AuthenticatedClient
Expand All @@ -34,13 +33,6 @@
from ..retrieval import attribute_values as att_vals
from ..retrieval import util
from ..retrieval.attribute_filter import split_attribute_filters
from ..retrieval.attribute_types import TYPE_AGGREGATIONS


@dataclass(frozen=True)
class AttributeDefinitionAggregation:
attribute_definition: identifiers.AttributeDefinition
aggregation: Literal["last", "min", "max", "average", "variance"]


def fetch_attribute_definitions(
Expand All @@ -62,53 +54,6 @@ def fetch_attribute_definitions(
yield util.Page(items=new_items)


def fetch_attribute_definition_aggregations(
client: AuthenticatedClient,
project_identifiers: Iterable[identifiers.ProjectIdentifier],
run_identifiers: Iterable[identifiers.RunIdentifier],
attribute_filter: filters._BaseAttributeFilter,
executor: Executor,
batch_size: int = env.NEPTUNE_QUERY_ATTRIBUTE_DEFINITIONS_BATCH_SIZE.get(),
) -> Generator[
tuple[util.Page[identifiers.AttributeDefinition], util.Page[AttributeDefinitionAggregation]], None, None
]:
"""
Each attribute definition is yielded once when it's first encountered.
If the attribute definition is of a type that supports aggregations (for now only float_series),
it's then yielded once for each aggregation in the filter that returned it.
"""

pages_filters = _fetch_attribute_definitions(
client, project_identifiers, run_identifiers, attribute_filter, batch_size, executor
)

seen_definitions: set[identifiers.AttributeDefinition] = set()
seen_definition_aggregations: set[AttributeDefinitionAggregation] = set()

for page, filter_ in pages_filters:
new_definitions = []
new_definition_aggregations = []

for definition in page.items:
if definition not in seen_definitions:
new_definitions.append(definition)
seen_definitions.add(definition)

if definition.type in TYPE_AGGREGATIONS.keys():
for aggregation in filter_.aggregations:
if aggregation not in TYPE_AGGREGATIONS[definition.type]:
continue

definition_aggregation = AttributeDefinitionAggregation(
attribute_definition=definition, aggregation=aggregation
)
if definition_aggregation not in seen_definition_aggregations:
new_definition_aggregations.append(definition_aggregation)
seen_definition_aggregations.add(definition_aggregation)

yield util.Page(items=new_definitions), util.Page(items=new_definition_aggregations)


def _fetch_attribute_definitions(
client: AuthenticatedClient,
project_identifiers: Iterable[identifiers.ProjectIdentifier],
Expand Down Expand Up @@ -154,10 +99,10 @@ def fetch_attribute_values(
client, project_identifier, run_identifiers, attribute_filter, batch_size, executor
)

seen_items: set[att_vals.AttributeValue] = set()
seen_items: set[Tuple[identifiers.RunIdentifier, identifiers.AttributeDefinition]] = set()
for page in pages_filters:
new_items = [item for item in page.items if item not in seen_items]
seen_items.update(new_items)
new_items = [item for item in page.items if (item.run_identifier, item.attribute_definition) not in seen_items]
seen_items.update((item.run_identifier, item.attribute_definition) for item in new_items)
yield util.Page(items=new_items)


Expand Down
17 changes: 8 additions & 9 deletions src/neptune_query/internal/composition/fetch_metrics.py
Original file line number Diff line number Diff line change
Expand Up @@ -30,7 +30,7 @@
type_inference,
validation,
)
from ..composition.attribute_components import fetch_attribute_definitions_split
from ..composition.attribute_components import fetch_attribute_values_by_filter_split
from ..context import (
Context,
get_context,
Expand Down Expand Up @@ -145,24 +145,23 @@ def go_fetch_sys_attrs() -> Generator[list[identifiers.SysId], None, None]:
output = concurrency.generate_concurrently(
items=go_fetch_sys_attrs(),
executor=executor,
downstream=lambda sys_ids: fetch_attribute_definitions_split(
downstream=lambda sys_ids: fetch_attribute_values_by_filter_split(
client=client,
project_identifier=project_identifier,
attribute_filter=attributes,
executor=executor,
fetch_attribute_definitions_executor=fetch_attribute_definitions_executor,
sys_ids=sys_ids,
downstream=lambda sys_ids_split, definitions_page: concurrency.generate_concurrently(
downstream=lambda values_page: concurrency.generate_concurrently(
items=split.split_series_attributes(
items=(
identifiers.RunAttributeDefinition(
run_identifier=identifiers.RunIdentifier(project_identifier, sys_id),
attribute_definition=definition,
run_identifier=value.run_identifier,
attribute_definition=value.attribute_definition,
)
for sys_id in sys_ids_split
for definition in definitions_page.items
if definition.type == "float_series"
)
for value in values_page.items
if value.attribute_definition.type == "float_series"
),
),
executor=executor,
downstream=lambda run_attribute_definitions_split: concurrency.return_value(
Expand Down
11 changes: 5 additions & 6 deletions src/neptune_query/internal/composition/fetch_series.py
Original file line number Diff line number Diff line change
Expand Up @@ -103,22 +103,21 @@ def go_fetch_sys_attrs() -> Generator[list[identifiers.SysId], None, None]:
output = concurrency.generate_concurrently(
items=go_fetch_sys_attrs(),
executor=executor,
downstream=lambda sys_ids: _components.fetch_attribute_definitions_split(
downstream=lambda sys_ids: _components.fetch_attribute_values_by_filter_split(
client=client,
project_identifier=project_identifier,
attribute_filter=attributes_restricted,
executor=executor,
fetch_attribute_definitions_executor=fetch_attribute_definitions_executor,
sys_ids=sys_ids,
downstream=lambda sys_ids_split, definitions_page: concurrency.generate_concurrently(
downstream=lambda values_page: concurrency.generate_concurrently(
items=split.split_series_attributes(
items=(
identifiers.RunAttributeDefinition(
run_identifier=identifiers.RunIdentifier(project_identifier, sys_id),
attribute_definition=definition,
run_identifier=value.run_identifier,
attribute_definition=value.attribute_definition,
)
for sys_id in sys_ids_split
for definition in definitions_page.items
for value in values_page.items
),
),
executor=executor,
Expand Down
46 changes: 9 additions & 37 deletions src/neptune_query/internal/composition/fetch_table.py
Original file line number Diff line number Diff line change
Expand Up @@ -12,12 +12,10 @@
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from collections import defaultdict
from typing import (
Generator,
Literal,
Optional,
Union,
)

import pandas as pd
Expand All @@ -34,7 +32,6 @@
type_inference,
validation,
)
from ..composition.attributes import AttributeDefinitionAggregation
from ..filters import (
_Attribute,
_BaseAttributeFilter,
Expand All @@ -61,8 +58,6 @@ def fetch_table(
type_suffix_in_column_names: bool,
context: Optional[_context.Context] = None,
container_type: search.ContainerType,
# flatten_aggregations: Only allow "last" aggregation and skip the aggregation sub-column in the output
flatten_aggregations: bool = False,
) -> pd.DataFrame:
validation.validate_limit(limit)
_sort_direction = validation.validate_sort_direction(sort_direction)
Expand Down Expand Up @@ -95,7 +90,6 @@ def fetch_table(

sys_id_label_mapping: dict[identifiers.SysId, str] = {}
result_by_id: dict[identifiers.SysId, list[att_vals.AttributeValue]] = {}
selected_aggregations: dict[identifiers.AttributeDefinition, set[str]] = defaultdict(set)

def go_fetch_sys_attrs() -> Generator[list[identifiers.SysId], None, None]:
for page in search.fetch_sys_id_labels(container_type)(
Expand All @@ -116,54 +110,32 @@ def go_fetch_sys_attrs() -> Generator[list[identifiers.SysId], None, None]:
output = concurrency.generate_concurrently(
items=go_fetch_sys_attrs(),
executor=executor,
downstream=lambda sys_ids: _components.fetch_attribute_definition_aggregations_split(
downstream=lambda sys_ids: _components.fetch_attribute_values_by_filter_split(
client=client,
project_identifier=project_identifier,
attribute_filter=attributes,
executor=executor,
fetch_attribute_definitions_executor=fetch_attribute_definitions_executor,
sys_ids=sys_ids,
downstream=lambda sys_ids_split, definitions_page, aggregations_page: concurrency.fork_concurrently(
executor=executor,
downstreams=[
lambda: _components.fetch_attribute_values_split(
client=client,
project_identifier=project_identifier,
executor=executor,
sys_ids=sys_ids_split,
attribute_definitions=definitions_page.items,
downstream=concurrency.return_value,
),
lambda: concurrency.return_value(aggregations_page.items),
],
),
downstream=concurrency.return_value,
),
)
results: Generator[
Union[util.Page[att_vals.AttributeValue], dict[identifiers.AttributeDefinition, set[str]]], None, None
] = concurrency.gather_results(output)
results: Generator[util.Page[att_vals.AttributeValue], None, None] = concurrency.gather_results(output)

for result in results:
if isinstance(result, util.Page):
attribute_values_page = result
for attribute_value in attribute_values_page.items:
sys_id = attribute_value.run_identifier.sys_id
result_by_id[sys_id].append(attribute_value)
elif isinstance(result, list):
aggregations: list[AttributeDefinitionAggregation] = result
for aggregation in aggregations:
selected_aggregations[aggregation.attribute_definition].add(aggregation.aggregation)
else:
raise RuntimeError(f"Unexpected result type: {type(result)}")
attribute_values_page = result
for attribute_value in attribute_values_page.items:
sys_id = attribute_value.run_identifier.sys_id
result_by_id[sys_id].append(attribute_value)

result_by_name = _map_keys_preserving_order(result_by_id, sys_id_label_mapping)
dataframe = output_format.convert_table_to_dataframe(
table_data=result_by_name,
project_identifier=project_identifier,
selected_aggregations=selected_aggregations,
selected_aggregations={},
type_suffix_in_column_names=type_suffix_in_column_names,
index_column_name="experiment" if container_type == search.ContainerType.EXPERIMENT else "run",
flatten_aggregations=flatten_aggregations,
flatten_aggregations=True,
)

return dataframe
Expand Down
13 changes: 7 additions & 6 deletions src/neptune_query/internal/output_format.py
Original file line number Diff line number Diff line change
Expand Up @@ -67,10 +67,8 @@ def convert_table_to_dataframe(
flatten_aggregations: bool = False,
) -> pd.DataFrame:

if flatten_aggregations:
has_non_last_aggregations = any(aggregations != {"last"} for aggregations in selected_aggregations.values())
if has_non_last_aggregations:
raise ValueError("Cannot flatten aggregations when selected aggregations include more than just 'last'. ")
if flatten_aggregations and selected_aggregations:
raise ValueError("flatten_aggregations expects the selected aggregations to be empty and only extracts 'last'.")

if not table_data and not flatten_aggregations:
return pd.DataFrame(
Expand All @@ -91,9 +89,12 @@ def convert_row(label: str, values: list[AttributeValue]) -> dict[tuple[str, str
raise ConflictingAttributeTypes([value.attribute_definition.name])
if value.attribute_definition.type in TYPE_AGGREGATIONS:
aggregation_value = value.value
selected_subset = selected_aggregations.get(value.attribute_definition, set())
aggregations_set = TYPE_AGGREGATIONS[value.attribute_definition.type]

if flatten_aggregations:
selected_subset = {"last"}
else:
selected_subset = selected_aggregations.get(value.attribute_definition, set())
aggregations_set = TYPE_AGGREGATIONS[value.attribute_definition.type]
agg_subset_values = get_aggregation_subset(aggregation_value, selected_subset, aggregations_set)

for agg_name, agg_value in agg_subset_values.items():
Expand Down
1 change: 0 additions & 1 deletion src/neptune_query/runs.py
Original file line number Diff line number Diff line change
Expand Up @@ -289,7 +289,6 @@ def fetch_runs_table(
limit=limit,
type_suffix_in_column_names=type_suffix_in_column_names,
container_type=_search.ContainerType.RUN,
flatten_aggregations=True,
)


Expand Down
4 changes: 2 additions & 2 deletions tests/e2e/internal/test_split.py
Original file line number Diff line number Diff line change
Expand Up @@ -224,8 +224,8 @@ def test_fetch_string_series_values_retrieval(client, project, experiment_identi
"exp_limit,attr_limit",
[
(1, len(LONG_PATH_SERIES)),
(2, len(LONG_PATH_SERIES)),
(3, len(LONG_PATH_SERIES)),
(2, len(LONG_PATH_SERIES) // 2), # TODO: ALL SHOULD PASS with full length! backend bug
(3, len(LONG_PATH_SERIES) // 3),
],
)
def test_fetch_string_series_values_composition(client, project, experiment_identifiers, exp_limit, attr_limit):
Expand Down
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