exec: Assuming unrestricted shared filesystem usage. host: pkrvmsl9tci6h6u Building DAG of jobs... Creating conda environment /home/runner/.conda/lib/python3.13/site-packages/showyourwork/workflow/envs/tectonic.yml... Downloading and installing remote packages. Cleaning up conda package tarballs. Environment for /home/runner/.conda/lib/python3.13/site-packages/showyourwork/workflow/envs/tectonic.yml created (location: .snakemake/conda/e98b22c491db2af523f36b5448fde58c_) Using shell: /usr/bin/bash Provided cores: 1 (use --cores to define parallelism) Rules claiming more threads will be scaled down. Job stats: job count --------------------- ------- syw__main 1 syw__preprocess 1 syw__preprocess_setup 1 syw__preprocess_xml 1 total 4 Select jobs to execute... Execute 1 jobs... [Mon Aug 11 07:21:37 2025] Job 3: Preprocess: Setting up... Reason: Missing output files: /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/xstring.tex, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/showyourwork-logo.pdf, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/showyourwork-stamp.pdf, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/showyourwork.otf, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/ms.tex, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/lineno.sty, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/listofitems.tex, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/showyourwork.tex, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/xstring.sty [Mon Aug 11 07:21:38 2025] Finished jobid: 3 (Rule: syw__preprocess_setup) 1 of 4 steps (25%) done Select jobs to execute... Execute 1 jobs... [Mon Aug 11 07:21:38 2025] Job 2: Preprocess: Generating XML tree... Reason: Missing output files: /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/showyourwork.xml; Input files updated by another job: /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/xstring.tex, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/showyourwork-logo.pdf, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/showyourwork-stamp.pdf, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/showyourwork.tex, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/ms.tex, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/lineno.sty, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/listofitems.tex, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/showyourwork.otf, /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/xstring.sty Activating conda environment: .snakemake/conda/e98b22c491db2af523f36b5448fde58c_ [Mon Aug 11 07:21:46 2025] Finished jobid: 2 (Rule: syw__preprocess_xml) 2 of 4 steps (50%) done Select jobs to execute... Execute 1 jobs... [Mon Aug 11 07:21:46 2025] Job 1: Preprocess: Setting up the workflow... Reason: Missing output files: .showyourwork/config.json; Input files updated by another job: /home/runner/work/test-matplotlib-latex/test-matplotlib-latex/.showyourwork/preprocess/showyourwork.xml [Mon Aug 11 07:21:46 2025] Finished jobid: 1 (Rule: syw__preprocess) 3 of 4 steps (75%) done Select jobs to execute... Execute 1 jobs... [Mon Aug 11 07:21:46 2025] localrule syw__main: input: .showyourwork/config.json jobid: 0 reason: Input files updated by another job: .showyourwork/config.js